Thomas Charles Maloney , MS

B.S.: University of Cincinnati (Physics)

M.S.: University of Cincinnati (Physics)

Tom has more than a decade of experience in image processing and statistical analysis of functional and structural MRI.  He is an experienced programmer in multiple languages, including Python, Bash and R.  Tom enjoys constructing complex image analysis workflows and pipelines for large imaging studies.  He also enjoys creating image analysis algorithms to extract quantitative features from imaging datasets. He is currently working toward his PhD in Biomedical Informatics and hopes to leverage the growing number of imaging datasets, along with advances in machine learning and computation.

Peer Reviewed Publications

Li, Hailong; He, Lili; Dudley, Jonathan A; Maloney, Thomas C; Somasundaram, Elanchezhian; Brady, Samuel L; Parikh, Nehal A; Dillman, Jonathan R (2021. ) DeepLiverNet: a deep transfer learning model for classifying liver stiffness using clinical and T2-weighted magnetic resonance imaging data in children and young adults.Pediatric radiology, , 51 (3 ) ,392-402 More Information

Vannest, Jennifer; Radhakrishnan, Rupa; Gutierrez-Colina, Ana M; Wade, Shari L; Maloney, Thomas; Combs, Angela; Turnier, Luke; Merder, Shelby; Altaye, Mekibib; Tzipi-Horowitz-Kraus, ; Modi, Avani C (2021. ) Altered functional network connectivity and working memory dysfunction in adolescents with epilepsy.Brain imaging and behavior, , More Information

Gutierrez-Colina, Ana M; Vannest, Jennifer; Maloney, Thomas; Wade, Shari L; Combs, Angela; Horowitz-Kraus, Tzipi; Modi, Avani C (2021. ) The neural basis of executive functioning deficits in adolescents with epilepsy: a resting-state fMRI connectivity study of working memory.Brain imaging and behavior, , 15 (1 ) ,166-176 More Information

Boyne, Pierce; Doren, Sarah; Scholl, Victoria; Staggs, Emily; Whitesel, Dustyn; Maloney, Thomas; Awosika, Oluwole; Kissela, Brett; Dunning, Kari; Vannest, Jennifer (2021. ) Functional magnetic resonance brain imaging of imagined walking to study locomotor function after stroke.Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology, , 132 (1 ) ,167-177 More Information

Beckwith, Travis; Cecil, Kim; Altaye, Mekibib; Severs, Rachel; Wolfe, Christopher; Percy, Zana; Maloney, Thomas; Yolton, Kimberly; LeMasters, Grace; Brunst, Kelly; Ryan, Patrick (2020. ) Reduced gray matter volume and cortical thickness associated with traffic-related air pollution in a longitudinally studied pediatric cohort.PloS one, , 15 (1 ) ,e0228092 More Information

Espay, Alberto J; Ries, Scott; Maloney, Thomas; Vannest, Jennifer; Neefus, Erin; Dwivedi, Alok K; Allendorfer, Jane B; Wulsin, Lawson R; LaFrance, W Curt; Lang, Anthony E; Szaflarski, Jerzy P (2019. ) Clinical and neural responses to cognitive behavioral therapy for functional tremor.Neurology, , 93 (19 ) ,e1787-e1798 More Information

He, Lili; Li, Hailong; Dudley, Jonathan A; Maloney, Thomas C; Brady, Samuel L; Somasundaram, Elanchezhian; Trout, Andrew T; Dillman, Jonathan R (2019. ) Machine Learning Prediction of Liver Stiffness Using Clinical and T2-Weighted MRI Radiomic Data.AJR. American journal of roentgenology, , 213 (3 ) ,592-601 More Information

Brunst, Kelly J; Ryan, Patrick H; Altaye, Mekibib; Yolton, Kimberly; Maloney, Thomas; Beckwith, Travis; LeMasters, Grace; Cecil, Kim M (2019. ) Myo-inositol mediates the effects of traffic-related air pollution on generalized anxiety symptoms at age 12?years.Environmental research, , 175 ,71-78 More Information

Vannest, Jennifer; Maloney, Thomas C; Tenney, Jeffrey R; Szaflarski, Jerzy P; Morita, Diego; Byars, Anna W; Altaye, Mekibib; Holland, Scott K; Glauser, Tracy A (2019. ) Changes in functional organization and functional connectivity during story listening in children with benign childhood epilepsy with centro-temporal spikes.Brain and language, , 193 ,10-17 More Information

Boyne, Pierce; Maloney, Thomas; DiFrancesco, Mark; Fox, Michael D; Awosika, Oluwole; Aggarwal, Pushkar; Woeste, Jennifer; Jaroch, Laurel; Braswell, Daniel; Vannest, Jennifer (2018. ) Resting-state functional connectivity of subcortical locomotor centers explains variance in walking capacity.Human brain mapping, , 39 (12 ) ,4831-4843 More Information

Yuan, Weihong; Dudley, Jonathan; Barber Foss, Kim D; Ellis, Jonathan D; Thomas, Staci; Galloway, Ryan T; DiCesare, Christopher A; Leach, James L; Adams, Janet; Maloney, Thomas; Gadd, Brooke; Smith, David; Epstein, Jeff N; Grooms, Dustin R; Logan, Kelsey; Howell, David R; Altaye, Mekibib; Myer, Gregory D (2018. ) Mild Jugular Compression Collar Ameliorated Changes in Brain Activation of Working Memory after One Soccer Season in Female High School Athletes.Journal of neurotrauma, , 35 (11 ) ,1248-1259 More Information

Dietz, Aimee; Vannest, Jennifer; Maloney, Thomas; Altaye, Mekibib; Holland, Scott; Szaflarski, Jerzy P (2018. ) The feasibility of improving discourse in people with aphasia through AAC: Clinical and functional MRI correlates.Aphasiology, , 32 (6 ) ,693-719 More Information

Espay, Alberto J; Maloney, Thomas; Vannest, Jennifer; Norris, Matthew M; Eliassen, James C; Neefus, Erin; Allendorfer, Jane B; Chen, Robert; Szaflarski, Jerzy P (2018. ) Dysfunction in emotion processing underlies functional (psychogenic) dystonia.Movement disorders : official journal of the Movement Disorder Society, , 33 (1 ) ,136-145 More Information

Espay, Alberto J; Maloney, Thomas; Vannest, Jennifer; Norris, Matthew M; Eliassen, James C; Neefus, Erin; Allendorfer, Jane B; Lang, Anthony E; Szaflarski, Jerzy P (2018. ) Impaired emotion processing in functional (psychogenic) tremor: A functional magnetic resonance imaging study.NeuroImage. Clinical, , 17 ,179-187 More Information

Yuan, Weihong; Leach, James; Maloney, Thomas; Altaye, Mekibib; Smith, David; Gubanich, Paul J; Barber Foss, Kim D; Thomas, Staci; DiCesare, Christopher A; Kiefer, Adam W; Myer, Gregory D (2017. ) Neck Collar with Mild Jugular Vein Compression Ameliorates Brain Activation Changes during a Working Memory Task after a Season of High School Football.Journal of neurotrauma, , 34 (16 ) ,2432-2444 More Information

Dietz, Aimee; Vannest, Jennifer; Maloney, Thomas; Altaye, Mekibib; Szaflarski, Jerzy P; Holland, Scott K (2016. ) The Calculation of Language Lateralization Indices in Post-stroke Aphasia: A Comparison of a Standard and a Lesion-Adjusted Formula.Frontiers in human neuroscience, , 10 ,493 More Information

Vannest, Jennifer; Tenney, Jeffrey R; Altaye, Mekibib; Byars, Anna W; Spencer, Caroline; Maloney, Thomas C; Szaflarski, Jerzy P; Morita, Diego; Glauser, Tracy A (2016. ) Impact of frequency and lateralization of interictal discharges on neuropsychological and fine motor status in children with benign epilepsy with centrotemporal spikes.Epilepsia, , 57 (8 ) ,e161-7 More Information

Vannest, Jennifer; Tenney, Jeffrey R; Gelineau-Morel, Rose; Maloney, Thomas; Glauser, Tracy A (2015. ) Cognitive and behavioral outcomes in benign childhood epilepsy with centrotemporal spikes.Epilepsy & behavior : E&B, , 45 ,85-91 More Information

Sroka, M Claire; Vannest, Jennifer; Maloney, Thomas C; Horowitz-Kraus, Tzipi; Byars, Anna W; Holland, Scott K (2015. ) Relationship between receptive vocabulary and the neural substrates for story processing in preschoolers.Brain imaging and behavior, , 9 (1 ) ,43-55 More Information

Vannest, Jennifer; Maloney, Thomas; Kay, Benjamin; Siegel, Miriam; Allendorfer, Jane B; Banks, Christi; Altaye, Mekibib; Szaflarski, Jerzy P (2015. ) Age related-changes in the neural basis of self-generation in verbal paired associate learning.NeuroImage. Clinical, , 7 ,537-46 More Information

Redle, Erin; Vannest, Jennifer; Maloney, Thomas; Tsevat, Rebecca K; Eikenberry, Sarah; Lewis, Barbara; Shriberg, Lawrence D; Tkach, Jean; Holland, Scott K (2015. ) Functional MRI evidence for fine motor praxis dysfunction in children with persistent speech disorders.Brain research, , 1597 ,47-56 More Information

Maloney, Thomas C; Tenney, Jeffrey R; Szaflarski, Jerzy P; Vannest, Jennifer Simultaneous Electroencephalography and Functional Magnetic Resonance Imaging and the Identification of Epileptic Networks in Children.Journal of pediatric epilepsy, , 4 (4 ) ,174-183 More Information

Wu, Steve W; Maloney, Thomas; Gilbert, Donald L; Dixon, Stephan G; Horn, Paul S; Huddleston, David A; Eaton, Kenneth; Vannest, Jennifer Functional MRI-navigated repetitive transcranial magnetic stimulation over supplementary motor area in chronic tic disorders.Brain stimulation, , 7 (2 ) ,212-8 More Information

Tan, Lirong; Chen, Ye; Maloney, Thomas C; Caré, Marguerite M; Holland, Scott K; Lu, Long J (2013. ) Combined analysis of sMRI and fMRI imaging data provides accurate disease markers for hearing impairment.NeuroImage. Clinical, , 3 ,416-28 More Information

Vannest J.; Radhakrishnan R.; Gutierrez-Colina A.M.; Wade S.L.; Maloney T.; Combs A.; Turnier L.; Merder S.; Altaye M.; Tzipi-Horowitz-Kraus; Modi A.C. (01-01-2021. ) Altered functional network connectivity and working memory dysfunction in adolescents with epilepsy.Brain Imaging and Behavior, , More Information

Dietz A.; Vannest J.; Maloney T.; Altaye M.; Holland S.; Szaflarski J.P. (06-03-2018. ) The feasibility of improving discourse in people with aphasia through AAC: clinical and functional M.Aphasiology, , 32 (6 ) ,693-719 More Information

Dietz A.; Vannest J.; Maloney T.; Altaye M.; Szaflarski J.; Holland S. (10-13-2016. ) The calculation of language lateralization indices in post-stroke aphasia: A comparison of a standar.Frontiers in Human Neuroscience, , 10 (OCT2016 ) , More Information

Rajagopal A.; Shimony J.; McKinstry R.; Altaye M.; Maloney T.; Mangano F.; Limbrick D.; Holland S.; Jones B.; Simpson S.; Mercer D.; Yuan W. (12-01-2013. ) White matter microstructural abnormality in children with hydrocephalus detected by probabilistic di.American Journal of Neuroradiology, , 34 (12 ) ,2379-2385 More Information

Tan L.; Chen Y.; Maloney T.; Caré M.; Holland S.; Lu L. (11-11-2013. ) Combined analysis of sMRI and fMRI imaging data provides accurate disease markers for hearing impair.NeuroImage: Clinical, , 3 ,416-428 More Information

Suñol, Maria; Payne, Michael F; Tong, Han; Maloney, Thomas C; Ting, Tracy V; Kashikar-Zuck, Susmita; Coghill, Robert C; López-Solà, Marina (2022. ) Brain Structural Changes During Juvenile Fibromyalgia: Relationships With Pain, Fatigue, and Functional Disability.Arthritis & rheumatology (Hoboken, N.J.), , 74 (7 ) ,1284-1294 More Information

Tong, Han; Maloney, Thomas C; Payne, Michael F; King, Christopher D; Ting, Tracy V; Kashikar-Zuck, Susmita; Coghill, Robert C; López-Solà, Marina (2022. ) Processing of pain by the developing brain: evidence of differences between adolescent and adult females.Pain, , More Information

Williamson, Brady J; Khandwala, Vivek; Wang, David; Maloney, Thomas; Sucharew, Heidi; Horn, Paul; Haverbusch, Mary; Alwell, Kathleen; Gangatirkar, Shantala; Mahammedi, Abdelkader; Wang, Lily L; Tomsick, Thomas; Gaskill-Shipley, Mary; Cornelius, Rebecca; Khatri, Pooja; Kissela, Brett; Vagal, Achala (2022. ) Automated grading of enlarged perivascular spaces in clinical imaging data of an acute stroke cohort using an interpretable, 3D deep learning framework.Scientific reports, , 12 (1 ) ,788 More Information

Spencer, Caroline; Vannest, Jennifer; Maas, Edwin; Preston, Jonathan L; Redle, Erin; Maloney, Thomas; Boyce, Suzanne (2021. ) Neuroimaging of the Syllable Repetition Task in Children With Residual Speech Sound Disorder.Journal of speech, language, and hearing research : JSLHR, , 64 (6S ) ,2223-2233 More Information

Epstein, Jeffery N; Karalunas, Sarah L; Tamm, Leanne; Dudley, Jonathan A; Lynch, James D; Altaye, Mekibib; Simon, John O; Maloney, Thomas C; Atluri, Gowtham (2022. ) Examining reaction time variability on the stop-signal task in the ABCD study.Journal of the International Neuropsychological Society : JINS, , 1-11 More Information

Stewart, Hannah J; Cash, Erin K; Hunter, Lisa L; Maloney, Thomas; Vannest, Jennifer; Moore, David R (2022. ) Speech cortical activation and connectivity in typically developing children and those with listening difficulties.NeuroImage. Clinical, , 36 ,103172 More Information

Tong, Han; Maloney, Thomas C; Payne, Michael F; Suñol, Maria; Dudley, Jonathan A; King, Christopher D; Ting, Tracy V; Kashikar-Zuck, Susmita; Coghill, Robert C; López-Solà, Marina (2023. ) Augmented pain-evoked primary sensorimotor cortex activation in adolescent girls with juvenile fibromyalgia.Pain, , 164 (10 ) ,2316-2326 More Information

Spencer, Caroline; Vannest, Jennifer; Preston, Jonathan L; Maas, Edwin; Sizemore, Erin Redle; McAllister, Tara; Whalen, D H; Maloney, Thomas; Boyce, Suzanne (2023. ) Neural Changes in Children With Residual Speech Sound Disorder After Ultrasound Biofeedback Speech Therapy.Journal of speech, language, and hearing research : JSLHR, , 66 (9 ) ,3223-3241 More Information

Dudley, Jonathan A; Maloney, Thomas C; Simon, John O; Atluri, Gowtham; Karalunas, Sarah L; Altaye, Mekibib; Epstein, Jeffery N; Tamm, Leanne (2023. ) ABCD_Harmonizer: An Open-source Tool for Mapping and Controlling for Scanner Induced Variance in the Adolescent Brain Cognitive Development Study.Neuroinformatics, , 21 (2 ) ,323-337 More Information

Tong, Han; Maloney, Thomas C; Payne, Michael F; Suñol, Maria; Dudley, Jonathan A; King, Christopher D; Ting, Tracy V; Kashikar-Zuck, Susmita; Coghill, Robert C; López-Solà, Marina (2023. ) Augmented pain-evoked primary sensorimotor cortex activation in adolescent girls with juvenile fibromyalgia.Pain, , 164 (10 ) ,2316-2326 More Information

Spencer, Caroline; Vannest, Jennifer; Preston, Jonathan L; Maas, Edwin; Sizemore, Erin Redle; McAllister, Tara; Whalen, D H; Maloney, Thomas; Boyce, Suzanne (2023. ) Neural Changes in Children With Residual Speech Sound Disorder After Ultrasound Biofeedback Speech Therapy.Journal of speech, language, and hearing research : JSLHR, , 66 (9 ) ,3223-3241 More Information

Dudley, Jonathan A; Maloney, Thomas C; Simon, John O; Atluri, Gowtham; Karalunas, Sarah L; Altaye, Mekibib; Epstein, Jeffery N; Tamm, Leanne (2023. ) ABCD_Harmonizer: An Open-source Tool for Mapping and Controlling for Scanner Induced Variance in the Adolescent Brain Cognitive Development Study.Neuroinformatics, , 21 (2 ) ,323-337 More Information

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